25 Commits
Author SHA1 Message Date
arc53-machine 3572d968ec Read private repositories only with the user's own GitHub token
GITHUB_ACCESS_TOKEN belongs to the server, but any user could ingest any
repository it can see, private ones included. It is now used only for
public repositories; the loader checks the repository's visibility first
and asks for a GitHub connection otherwise.

The loader also takes a token from the connection a source syncs from.
Merging a connection's keys into a plain repository URL no longer fails
on json.loads, manual Sync now passes the source's connection, and a
token GitHub rejects pauses the connection's sources for reconnect.
2026-09-29 10:41:03 +01:00
arc53-machine 3511004f50 Connections own their credentials
Migration 0038 moves every stored secret (OAuth tokens, MCP OAuth
tokens and client registrations, API keys) into the connection's
encrypted envelope, links API-key tools to one connection per distinct
credential, allows several accounts per provider, and adds
credential_mode to sources and tools. OAuth MCP tools keep resolving
each member's own token, as they did before.

docsgpt.connectors.service is now the only reader of OAuth tokens:
get_valid_token_info refreshes under a row lock and persists rotated
refresh tokens, and a revoked grant flags the connection, pauses its
sources and notifies the owner. Loaders build from a connection
(BaseConnectorLoader.from_connection), so scheduled sync covers Drive,
SharePoint and Confluence sources with no browser. S3 and Reddit keys
stay on the connection instead of in remote_data.

New endpoints: POST /api/connections, /setup, /reconnect,
/picker-token, /claim, DELETE /api/connections/<id>, per-action
permissions and MCP refresh-tools. Upload, file listing, sync and
validate-session take a connection_id; session tokens keep working for
this release. The tool executor reads credentials from the resolved
connection (owner or member mode) and pauses on a Connect card when a
connection needs signing in. docsgpt connectors reencrypt rewrites
stored credentials after a key rotation.
2026-09-28 17:03:09 +01:00
arc53-machine f3f817b1e8 Store execution traces in a new request_traces table
One row per execution holding its span tree as JSONB, linked to Logs rows
by request, message, activity and workflow-run ids. message_id cascades so
deleting or truncating a conversation drops its traces; a daily beat task
enforces TRACES_RETENTION_DAYS.
2026-09-23 17:19:54 +01:00
Alex adb6963523 fix(rename): address review on the package rename
- CI installs the backend requirements from docsgpt/; the old cd into
  application/ silently installed nothing.
- The root .dockerignore re-admits only application/__init__.py. An upgraded
  checkout may still hold gitignored application/{inputs,indexes,vectors,.env}
  from the old layout, and the directory rule shipped them into the image.
- The compose files keep the host bind mounts on application/{indexes,inputs,
  vectors}, so an upgrade does not start with empty data. The move comes with
  the packaging work, together with an upgrade note.
- The alias loader puts the real docsgpt spec back on the shared module object
  after import (the import machinery stamped the alias spec on it, which made
  importlib.reload rename the module and skip re-execution) and delegates
  get_code/get_source/get_filename to the target loader, so
  python -m application.<name> runs.
- Each legacy application.* task name is registered as its own task object,
  a subclass carrying the old name. Registering the same object under two
  keys made Celery's tracer log every run under whichever name it built last.
- The redbeat key prefix stays redbeat:docsgpt:; the three schedule_syncs
  entries get stable names instead. redbeat tracks its static entries and
  deletes the ones that vanish from beat_schedule at start-up, and rewrites the
  task path of named entries in place, so neither a prefix bump nor a cleanup
  pass is needed (checked against redbeat 2.4.2 with a seeded Redis).
2026-09-07 12:02:07 +01:00
Alex 574f96341e refactor: rename the application package to docsgpt
The backend import package is now docsgpt, the name it will carry on PyPI;
application was far too generic to install into anyone's site-packages.
git mv plus a mechanical rewrite of every import, dotted string and path
reference: 734 Python files, the compose files, Dockerfile, workflows, docs,
setup scripts, devcontainer, k8s manifests, vscode config, pytest and coverage
config, .gitignore. Behaviour is unchanged.

Kept for one release:
- A top-level application package whose meta-path finder resolves
  application.x.y to the already-imported docsgpt.x.y object, so old imports
  and entry points (celery -A application.app.celery,
  uvicorn application.asgi:asgi_app) keep working with a FutureWarning.
- Celery registers every application.* task name as an alias of its
  docsgpt.* task on start-up, so messages queued by the previous release still
  run. The redbeat key prefix moves to redbeat:docsgpt:v2: so schedule entries
  the previous release wrote are left unread instead of firing twice.

The backend image builds from the repository root (docker build -f
docsgpt/Dockerfile .) so it can ship the alias package; a root .dockerignore
allow-lists docsgpt/ and application/ and keeps caches, local data, .env
files, the sample index files and the Dockerfile out. Compose and the image
workflows point at the new context.
2026-09-07 10:20:43 +01:00
Alex 29f661f3c7 fix: more test fixes and additions, fix loss on resume 2026-08-22 12:57:58 +01:00
Alex e96ff8658c fix: more stability for durable tasks, retry strategy, refactor dead
code
2026-08-22 09:44:09 +01:00
Alex 0b36257202 feat: parser improvements and fixes 2026-08-19 23:49:26 +01:00
Alex 64a6b81fbb feat: guardrails init 2026-08-11 00:09:56 +01:00
Alex 64b3bd3356 feat: harden webtool 2026-07-20 19:57:44 +01:00
Alex 0adf88abed feat: improved compatability layer and responses api handing 2026-07-13 09:37:58 +01:00
Alex 6dd5cf472a feat: improve workflow agent tool interation 2026-07-09 10:22:44 +01:00
Alex 66786c2760 fix: remove code exec as default and sec improvements 2026-07-08 18:50:10 +01:00
Alex 75e07af78f fix: minor issue fixes 2026-06-30 18:36:06 +02:00
Alex 37d93cbd86 Parse documents on a Celery parsing worker via a read_document tool
Replace the sandbox Docling extractor with read_document, backed by the in-process
backend parser (the same one ingestion uses) and offloaded to a dedicated
'parsing' Celery queue so it can run on GPU-capable workers with predictable RAM.
The tool resolves the input ref under the run-scoped gate, enqueues the parse,
and awaits it with a timeout (degrading to an error rather than hanging); the
worker independently re-resolves the artifact through the same gate and never
trusts a raw path. Untrusted files get the upload path's safeguards (extension
whitelist, size cap, sanitized temp file, cleanup). Options: output
(markdown/text/structured/chunks), ocr, pages, engine, max_chars, include_tables,
persist, json_schema. The workflow native-file 'extract' fallback now uses the
same worker path, so document parsing no longer needs the sandbox and works on
every backend.

Also fixes the branch's periodic-task test (the sandbox reaper made it 12) and
points the dev and e2e Celery workers at the parsing queue.
2026-06-25 13:24:12 +01:00
Alex 4742aec4c6 feat(graphrag): durable extract_graph task + ingest-path enqueue + enable route
graph_enabled() sets kind=graphrag + retriever=graphrag. extract_graph_worker fetches the source's pgvector chunks and runs G3 extraction (graphrag_available guard, empty no-op). extract_graph durable+idempotent task; key varies with source updated_at so re-ingest/re-enable re-run incrementally (G3 checkpoint skips done chunks) while concurrent same-state enqueues dedup. The 4 ingest paths enqueue after embed when kind=graphrag (isolated in try/except so a broker hiccup can't fail the ingest). POST /api/sources/<id>/graphrag/enable: pgvector+GRAPHRAG_ENABLED gated, owner/editor write-authz; PATCH config still can't flip kind->graphrag. Unit G4.
2026-06-23 01:29:51 +01:00
Alex 0c9e0313bd feat(wiki): convert existing source to wiki + human page edit endpoint
Unit 5 of F-Wiki (D20-D23). convert_source_to_wiki task reuses reingest's storage file-load + parser to materialize files->wiki_pages (one page/file), skips/reports non-text, re-embeds per page, and flips kind=wiki + exposure=agentic_tool only when pages were created. POST /wiki/convert (explicit, write-authz; blank source enables inline, fileful enqueues the task; rejects mid-ingest). PUT /wiki/page for human edits (write-authz, optimistic version -> 409, re-embed). PATCH /config preserves kind (kind changes only via convert).
2026-06-22 20:16:18 +01:00
Alex f6400cd736 feat: per-source RAG configuration (retrieval strategies, chunking, exposure, prescreen)
Introduces a per-source config contract that makes RAG behavior strategy-dispatched instead of a single hardcoded path. Every source gains a validated JSONB config; an empty/absent config reproduces current behavior byte-for-byte, and the whole path is gated by PER_SOURCE_RETRIEVAL_ENABLED.

Foundation: sources.config JSONB column + migration 0022_source_config; SourceConfig/ChunkingConfig/RetrievalConfig pydantic models (strict on write, lenient on read); ChunkerCreator and RetrieverCreator.register registries; config threaded through the upload routes, ingest/remote/connector workers, and reingest.

Retrieval: a Dispatcher groups sources by retriever key (all-classic collapses to today's single ClassicRAG under one shared token budget; non-classic retrievers get their own instance), removing the previous single-global-retriever collapse in stream_processor. Per-source chunks, score_threshold (honored for pgvector/mongodb, safely ignored elsewhere), and rephrase_query toggle. New PATCH /api/sources/<id>/config with team-aware (effective_write_owner) authz and a requires_reingest signal.

Chunking strategies: recursive, markdown, parent_child (selectable per source; re-ingest to apply). Search exposure: per-source prefetch vs agentic_tool for agentic/research agents. Map-reduce prescreen: optional LLM relevance pre-filter implemented as a composable post-retrieval stage that wraps any retriever.

Backend and frontend (shared Retrieval options panel + edit modal) with tests; backend suite and frontend vitest green. Excludes the wiki and GraphRAG flagships.
2026-06-20 21:54:23 +01:00
Alex 0507b32221 feat: default tools (#2485)
* feat: default tools

* fix: tests

* feat scheduler

* fix: scheduler UI

* Agent switch breadcrumbs

* fix: minor fixes to scheduler

* fix: tests
2026-05-22 16:05:03 +01:00
Alex 1de82ca040 fix: batch limits and failed task reque limit (#2484) 2026-05-18 22:22:43 +01:00
Alex e351f45d88 Feat notification system (#2472)
* feat: SSE notification system

Adds a per-user SSE pipe (GET /api/events) plus a per-message
chat-stream reconnect endpoint (GET /api/messages/<id>/events).

Backend substrate:
- application/events/ — durable journal (Redis Streams) + live
  pub/sub for user-scoped events, with publish_user_event() as
  the worker-side entrypoint.
- application/streaming/ — broadcast_channel for pub/sub fanout
  and event_replay for the per-message snapshot+tail path.
- application/storage/db/repositories/message_events.py +
  alembic 0007 — Postgres journal for chat-stream events.
- application/worker.py — ingest/reingest/remote/connector/
  attachment/mcp_oauth tasks publish queued/progress/completed/
  failed envelopes alongside their existing status updates.

Frontend client:
- frontend/src/events/ — connect/reconnect, Last-Event-ID cursor,
  backoff with jitter. Each tab runs its own connection; no
  cross-tab dedup (future work).
- frontend/src/notifications/ — recentEvents ring, cursor
  tracking, tool-approval toast.
- frontend/src/upload/uploadSlice.ts — extraReducers for
  source.ingest.* and attachment.* events.

Coverage: 132 SSE tests across events substrate, replay, journal,
routes, and worker publishes.

* refactor(attachments): remove polling, SSE-only

frontend/src/components/MessageInput.tsx no longer runs a 2s
setInterval against getTaskStatus for every processing
attachment. The attachment.* SSE reducers in uploadSlice.ts are
now the sole driver of attachment state transitions.

* feat(connector): consume source.ingest.* SSE, remove polling

frontend/src/components/ConnectorTree.tsx now mirrors FileTree's
slice-walking pattern: it watches notifications.recentEvents
for source.ingest.{completed,failed} envelopes matching the
sync's source id, and no longer polls /task_status every 2s.

* refactor(source-ingest): remove polling, SSE-only

frontend/src/upload/Upload.tsx and
frontend/src/components/FileTree.tsx no longer run getTaskStatus
polling fallbacks. The source.ingest.* SSE reducers in
uploadSlice.ts and FileTree's slice walk are now the sole
drivers of upload/reingest state transitions.

* refactor(mcp-oauth): carry authorization_url in SSE, remove polling

application/worker.py::mcp_oauth now publishes
authorization_url on the mcp.oauth.awaiting_redirect envelope.
frontend/src/modals/MCPServerModal.tsx consumes it from SSE
instead of polling /oauth_status/<task_id> every 1s.

The URL is generated inside DocsGPTOAuth.redirect_handler when
the FastMCP client triggers OAuth. The worker now plumbs a
publish callback through tool_config -> MCPTool -> DocsGPTOAuth
so the awaiting_redirect publish fires from inside the handler
at the exact point the URL becomes known. The legacy Redis
mcp_oauth_status setex writes and the GET
/api/mcp_server/oauth_status/<task_id> endpoint are kept as
belt-and-suspenders; nothing in the frontend reads them now.

* feat(source-ingest): plumb limited flag through SSE for token-cap UX

application/worker.py::ingest_worker and remote_worker now publish
``limited: bool`` on the source.ingest.completed envelope.
uploadSlice routes ``payload.limited === true`` to a failed status
with a ``tokenLimitReached`` flag, and UploadToast surfaces the
translated tokenLimit i18n string. No worker code path sets
limited=true today; this is a forward-looking contract so when
token-cap detection lands, the UX is already wired.

* refactor(mcp-oauth): read status from SSE journal, drop polling endpoint

MCPOAuthManager.get_oauth_status now walks the per-user SSE Streams
journal (user:{user_id}:stream) for the latest mcp.oauth.* envelope
matching the task id, returning the status string derived from the
event type suffix and the payload fields. The worker is the single
source of truth — its publish_user_event calls write the same
record the SSE client receives live.

Removed:
- /api/mcp_server/oauth_status/<task_id> route in
  application/api/user/tools/mcp.py
- mcp_oauth_status worker function and mcp_oauth_status_task Celery
  wrapper
- All mcp_oauth_status:{task_id} Redis setex writes (4 in mcp_oauth,
  2 in DocsGPTOAuth.redirect_handler / callback_handler)
- The update_status closure in mcp_oauth that wrote the polling
  payload

Tests updated:
- get_oauth_status now takes (task_id, user_id); new coverage walks
  a fake xrevrange response for the completed envelope, the no-match
  case, and a Redis-down case
- Removed TestMCPOAuthStatus route tests and TestMcpOauthStatusTask
  celery-wrapper test
- Removed the two oauth_status methods from the integration runner

mcp_oauth:auth_url/state/code/error Redis keys remain — they are
the OAuth flow's own state (not the dropped polling payload).

* chore(mcp-oauth): delete orphaned getMCPOAuthStatus client

The /api/mcp_server/oauth_status/<task_id> endpoint was removed in
the prior commit; the corresponding userService method and the
MCP_OAUTH_STATUS endpoint constant had no remaining callers in the
frontend, so they're deleted along with it.

* fix(events): drop live publish when journal write fails

application/events/publisher.py returned an envelope to live
pubsub subscribers even when the XADD to the durable journal
failed. The envelope had no ``id`` field, which bypassed the SSE
route's dedup floor and broke ``Last-Event-ID`` semantics for any
reconnecting client.

Best-effort delivery means dropping consistently, not delivering
inconsistent state. Now: if the journal write fails the publisher
returns None and skips the live publish entirely.

* fix(notifications): dedupe sseEventReceived against immediate dupes

Snapshot replay + live tail can both deliver the same id when the
live pubsub frame and the replay XRANGE overlap. The route's own
dedup floor catches the common case, but consumers walking
``recentEvents`` (FileTree, ConnectorTree, MCPServerModal,
ToolApprovalToast) would otherwise act on the same envelope
twice when a duplicate slipped through.

Belt-and-suspenders: short-circuit when the most recent id in
the ring matches the incoming one.

* fix(events): skip replay budget INCR when no snapshot work possible

_allow_replay incremented the per-user counter on every
/api/events GET, including no-op connects from a fresh client
with no cursor against an empty backlog. React StrictMode dev
double-mounts plus a few tabs trivially tripped the default
30-per-60s budget on idle reconnects.

XLEN pre-check: when last_event_id is None and the user stream
is empty, the connect can't do snapshot work — return True
without INCR. Cursor-bearing connects still INCR unconditionally
(probing the cursor's relationship to stream contents would
require a redundant XRANGE).

* fix(streaming): tighten journal contract + recover from seq collisions

Two related fixes to application/streaming/message_journal.py.

1. record_event now rejects non-dict payloads at the gate. The
   live path (base.py::_emit) wrapped non-dicts as
   {"value": payload}; the replay path in event_replay synthesized
   {"type": event_type}. A reconnecting client would receive a
   different envelope than the one originally streamed. Now both
   paths see byte-identical envelopes because non-dicts can't be
   journaled at all. The corresponding event_replay fallback is
   replaced with a warn-and-skip for any legacy rows.

2. record_event handles IntegrityError on (message_id, sequence_no)
   collisions by reading latest_sequence_no and retrying once with
   latest+1. The most likely cause is a stale seq seed on a
   continuation retry where the route read MAX(seq) from a
   separate connection before another writer committed past it.
   Previously the error was swallowed and the event silently
   dropped from the journal; now it lands at the next available
   seq. The live pubsub publish uses the materialised seq so the
   journal row and the live frame agree.

* perf(streaming): batch message_events INSERTs per stream

complete_stream previously opened a fresh db_session() per yielded
event, doing one Postgres INSERT + commit per chunk on the WSGI
thread. Streaming answers emit ~100s of answer chunks per response,
so the route was paying ~100 PG roundtrips per stream serialized on
commit latency.

New BatchedJournalWriter in application/streaming/message_journal.py
accumulates rows per stream and flushes on three triggers:
- size: buffer reaches 16 entries
- time: 100ms elapsed since the last flush
- lifecycle: close() at end-of-stream

Live pubsub publishes still fire synchronously per record(), so
subscribers see events in real time — only the durable journal write
is amortized. On bulk INSERT IntegrityError the writer falls back to
per-row record() with the existing seq+1 retry so a single colliding
seq doesn't drop the rest of the batch.

complete_stream wires journal_writer.close() into every exit path
(happy end, tool-approval-paused end, GeneratorExit, error handler)
so the terminal event is committed before the generator returns —
otherwise a reconnecting client could snapshot up to the last flush
boundary and live-tail waiting for an end that's still in memory.

Repository gets bulk_record() — one SQLAlchemy executemany INSERT
for the bulk path. All-or-nothing on collision (Postgres aborts the
whole batch); the writer's per-row fallback handles recovery.

* chore(upload): drop dead UploadTask.lastEventAt field

The lastEventAt field on UploadTask had no remaining consumers — the
matching Attachment.lastEventAt was cleaned up earlier. Remove the
field declaration and the slice write site.

* chore(frontend): drop orphaned getTaskStatus client

After the polling-removal sweep no caller in frontend/src/ references
userService.getTaskStatus or endpoints.USER.TASK_STATUS. The backend
route /api/task_status itself stays — agents, webhooks, e2e specs,
and the public docs still depend on it.

* docs(repo): remove stale planning docs from repo root

notification-channel-design.md, plan.md, and reminder-tool-design.md
were leftover Claude planning artifacts from the SSE substrate work
that landed accidentally. CLAUDE.md prohibits creating planning docs
unless asked — delete them.

* docs(message-events): clarify repo vs wrapper payload contract

MessageEventsRepository.record accepts any JSONB-compatible value; the
streaming wrapper record_event tightens this to dicts only because the
live and replay paths reconstruct non-dict payloads differently. Spell
the split out so the next reader of the repo method doesn't assume the
wrapper's contract applies here.

* refactor(events): raise on malformed stream id instead of lex fallback

stream_id_compare's lex-fallback branch was a footgun: a malformed id
that sorts lex-greater than a real one would pin live-tail dedup
forever, dropping every subsequent legitimate event silently. Both
current callers in application/api/events/routes.py pre-validate
inputs against _STREAM_ID_RE before calling, so changing the function
to raise ValueError is a no-op on the happy path and turns the future-
caller footgun into a loud failure.

* test(tasks): cover cleanup_message_events task body

Adds skipped-when-no-POSTGRES_URI and happy-path coverage for the
Celery janitor. The skipped path returns the documented short-circuit
shape without touching the repo. The happy path seeds a backdated
row, runs the task against the pg_conn fixture, and asserts the
retention window's row is deleted while in-window rows survive.
Mirrors the TestCleanupPendingToolState pattern.

* fix(notifications): treat /c/new as no current conversation

useMatch('/c/:conversationId') treats the literal URL /c/new as a
real conversation id, so the toast suppression check confused
'user is on /c/new' with 'user is on the conversation needing
approval'. Explicit guard: when the matched id is 'new', fall
through to the no-match case so approval toasts still surface.

* docs(events): enumerate publish_user_event None-return paths

The function returns Optional[str] today, with None conflating five
distinct outcomes (missing args / push disabled / unserialisable /
Redis down / XADD failed). Every current call site is fire-and-
forget and ignores the return, so the right move is to document the
five cases rather than promote to an enum return — keeps the API
small while making the diagnostic surface (logs) obvious. If a
future caller needs to react differently per reason, promote then.

* refactor(sources): move source-id derivation out of worker module

application/api/user/sources/upload.py imported _derive_source_id
from application.worker — pulling the entire Celery worker module
into the API process at import time just for a two-line helper.

Move DOCSGPT_INGEST_NAMESPACE and the derivation function to a
new application/storage/db/source_ids.py module that both layers
can import without that dependency edge. worker.py re-exports the
old names (_derive_source_id, DOCSGPT_INGEST_NAMESPACE) for
backward-compatible imports from tests and any other in-tree
callers; new code should import from the new module directly.

* fix(cache): enable Redis health_check_interval to surface half-open TCP

Without health_check_interval, a half-open TCP socket (NAT silently
dropped state, ELB idle-close) can leave pubsub.get_message hanging
past the SSE generator's keepalive cadence — the kernel never
surfaces the dead socket because no payload is in flight. Setting
health_check_interval=10 makes redis-py ping every 10s when
otherwise idle, so the next get_message after the dead window
raises and the SSE loop falls into its reconnect path instead of
silently freezing on the user.

* chore(events): rename attachment.processing.progress to attachment.progress

The event-type taxonomy was inconsistent: source ingest emits
source.ingest.progress (three segments) while attachments emitted
attachment.processing.progress (four segments). Drops the
.processing. infix for parity. Worker publish sites, the slice
reducer's match, and the worker tests all flip together.

No external consumers — the event type is purely internal between
the publisher and the in-tab slice; safe to rename in one commit.

* feat: events cleanup

* fix: better docs

* fix: e2e tests
2026-05-15 12:23:31 +01:00
Alex b4c4ab68f0 feat: durability and idempotency keys (#2450)
* feat: durability and idempotency keys

* feat: more durable frontend

* fix: tests

* fix: mini issues

* fix: better json validation

* fix: tests
2026-05-04 23:25:41 +01:00
Alex af618de13d Feat models (#2432)
* feat: simplified model structure

* fix: test

* fix: mini docstring stuff
2026-04-26 00:58:29 +01:00
Alex 0f20adcbf4 feat: pre depriciation 2026-04-14 00:19:50 +01:00
Alex ed0063aada chore: handlers tests 2026-03-30 12:53:50 +01:00