Update Serena project

.serena/project.yml

@@ -1,24 +1,24 @@
 # the name by which the project can be referenced within Serena/when chatting with the LLM.
 project_name: "serena"
 
-
 # list of language servers to start when using the LSP backend; choose from:
-#   ada                 al                  angular             ansible             bash
-#   bsl                 clojure             cpp                 cpp_ccls            crystal
-#   csharp              csharp_omnisharp    cue                 dart                elixir
-#   elm                 erlang              fortran             fsharp              gdscript
-#   go                  groovy              haskell             haxe                hlsl
-#   html                java                json                julia               kotlin
-#   latex               lean4               lua                 luau                markdown
-#   matlab              msl                 nix                 ocaml               pascal
-#   perl                php                 php_phpactor        php_phpantom        powershell
-#   python              python_jedi         python_pyrefly      python_ty           r
-#   rego                ruby                ruby_solargraph     rust                scala
-#   scss                solidity            svelte              swift               systemverilog
-#   terraform           toml                typescript          typescript_vts      vue
-#   yaml                zig
+#   ada                    al                     angular                ansible                bash
+#   bsl                    clojure                cpp                    cpp_ccls               crystal
+#   csharp                 csharp_omnisharp       cue                    dart                   deno
+#   elixir                 elm                    erlang                 fortran                fsharp
+#   gdscript               gleam                  go                     groovy                 haskell
+#   haxe                   hlsl                   html                   java                   json
+#   julia                  julia_fatou            kotlin                 latex                  lean4
+#   lua                    luau                   markdown               matlab                 msl
+#   nextflow               nix                    ocaml                  pascal                 perl
+#   php                    php_phpactor           php_phpantom           powershell             python
+#   python_basedpyright    python_jedi            python_pyrefly         python_ty              qml
+#   r                      rego                   ruby                   ruby_solargraph        rust
+#   scala                  scss                   solidity               svelte                 swift
+#   systemverilog          terraform              toml                   typescript             typescript_vts
+#   vue                    wolfram                yaml                   zig
 #   (This list may be outdated; generated with scripts/print_language_list.py;
-#   For the current list, see values of Language enum here:
+#   For the current list, see values of the LanguageServerId enum here:
 #   https://github.com/oraios/serena/blob/main/src/solidlsp/ls_config.py)
 # For some languages, there are several alternative language servers, e.g. csharp_omnisharp, ruby_solargraph.)
 # Note:
@@ -26,6 +26,7 @@ project_name: "serena"
 #   - For JavaScript, use typescript
 #   - For Angular projects, use angular (subsumes typescript+html; requires `npm install` in the project root)
 #   - For Svelte projects, use svelte (subsumes typescript/javascript for .svelte projects; requires npm)
+#   - For Deno projects, use deno (serves the same .ts/.js files as typescript; requires the deno CLI on PATH)
 #   - For SCSS / Sass / plain CSS, use scss (some-sass-language-server handles all three)
 #   - For Free Pascal/Lazarus, use pascal
 # Special requirements:
@@ -35,8 +36,8 @@ project_name: "serena"
 # The first language server is the default language and the respective language server will be used as a fallback.
 # Note that when using the JetBrains backend, language servers are not used and this list is correspondingly ignored.
 language_servers:
-  - python
-  - typescript
+- python
+- typescript
 
 # whether to use project's .gitignore files to ignore files
 ignore_all_files_in_gitignore: true
@@ -68,9 +69,8 @@ excluded_tools: []
 # Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
 included_optional_tools: []
 
-# initial prompt for the project,  which will be provided to the LLM upon project activation
-# (or within Serena's initial instructions if the project is activated at startup).
-## See:  https://oraios.github.io/serena/02-usage/050_configuration.html#prompt-templates
+# initial prompt for the project. It will always be given to the LLM upon activating the project
+# (contrary to the memories, which are loaded on demand).
 initial_prompt: |
   {{ embed_memory("critical_info") }}
 
@@ -177,3 +177,17 @@ ls_workspace_folders:
 #     - ../sibling-package
 #     - ../shared-lib
 ls_additional_workspace_folders: []
+
+# list of APIs (facades or facade methods, e.g. "lsp" or "lsp.get_diagnostics_for_symbol") to include in the REPL
+# that would otherwise be disabled (particularly optional methods, which are disabled by default).
+# This extends the existing inclusions (e.g. from the global configuration).
+included_apis: []
+
+# list of APIs (facades or facade methods, e.g. "lsp" or "lsp.find_symbol") to exclude from the REPL.
+# This extends the existing exclusions (e.g. from the global configuration).
+excluded_apis: []
+
+# The interface through which the agent (LLM) accesses Serena's functionality (overrides the global setting).
+# Valid values: tools, REPL (see the global configuration for details); leave empty to use the global setting.
+# Note: the interface is fixed at startup. If a project is activated post-init, its setting is not applied.
+agent_interface: